Corrected doc paths for development branch.

CMakeLists.txt

@@ -562,7 +562,7 @@ FIND_PACKAGE(Doxygen)
 IF(DOXYGEN_FOUND)
     SET(PHYSFS_OUTPUT_DOXYFILE "${CMAKE_CURRENT_BINARY_DIR}/Doxyfile")
     CONFIGURE_FILE(
-        "${CMAKE_CURRENT_SOURCE_DIR}/Doxyfile"
+        "${CMAKE_CURRENT_SOURCE_DIR}/docs/Doxyfile"
         "${PHYSFS_OUTPUT_DOXYFILE}"
         COPYONLY
     )

docs/Doxyfile

@@ -362,7 +362,7 @@ WARN_LOGFILE           =
 # directories like "/usr/src/myproject". Separate the files or directories 
 # with spaces.
 
-INPUT                  = physfs.h
+INPUT                  = src/physfs.h
 
 # If the value of the INPUT tag contains directories, you can use the 
 # FILE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp